tl;dr: need send custom pulses through usb cable arduino uno using java.
so, want simulate serial signals gps module arduino uno.
this, plan use signal wires of usb 2.0 connector rx , gnd pins of arduino.
because software hard find , oppurtunity practise, write myself using java.
you didn't ask actual questions, suppose if did ask question answer might project impossible. low-level usb hardware , drivers not allow send arbitrary pulses far know.
a more reasonable plan simulation usb-to-serial adapter. if install drivers properly, can connect serial port java program connect other serial port, perhaps using java library rxtx.
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